3 Kochnovsky Proezd (near metro station 'Aeroport').
Phone: +7 (495) 772-95-90 *12332
First Deputy Dean
Deputy Dean for Research and International Relations
Deputy Dean for Methodical and Educational Work
Deputy Dean for Development, Finance and Administration
In this talk I will give an overview of the computational steps in the analysis of a single cell-based large-scale microscopy experiments. First, I will present a novel microscopic image correction method designed to eliminate vignetting and uneven background effects which, left uncorrected, corrupt intensity-based measurements. New single-cell image segmentation methods will be presented using energy minimization methods. I will discuss the Advanced Cell Classifier (ACC) (www.cellclassifier.org), a machine learning software tool capable of identifying cellular phenotypes based on features extracted from the image. It provides an interface for a user to efficiently train machine learning methods to predict various phenotypes. For cases where discrete cell-based decisions are not suitable, we propose a method to use multi-parametric regression to analyze continuous biological phenomena. Finally, to improve the learning speed and accuracy, we recently developed an active learning scheme which selects the most informative cell samples.