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Статья
Sampling discretization and related problems

Kashin B. S., Kosov E., Limonova I. V. et al.

Journal of Complexity. 2022. Vol. 71.

Статья
Fast parametric curve matching (FPCM) for automatic spike detection

Kleeva D., Soghoyan G., Komoltsev I. et al.

Journal of Neural Engineering. 2022. Vol. 19. No. 3.

Статья
On free semigroups of affine maps on the real line

Kolpakov A., Talambutsa A.

Proceedings of the American Mathematical Society. 2022. Vol. 150. No. 6. P. 2301-2307.

Глава в книге
Empirical Study of Transformers for Source Code

Chirkova N., Troshin S.

In bk.: ESEC/FSE 2021: Proceedings of the 29th ACM Joint Meeting on European Software Engineering Conference and Symposium on the Foundations of Software Engineering. Association for Computing Machinery (ACM), 2021. P. 703-715.

Избранные публикации сотрудников факультета

2022 

Towards understanding and answering comparative questions
Bondarenko A., Braslavski P. et al.
ACM International Conference on Web Search and Data Mining (WSDM 2022), 66 74

Improving text generation via neural discourse planning
Chernyavskiy A. 
ACM International Conference on Web Search and Data Mining (WSDM 2022), 1543 1544


Measurement of the W boson mass
Aaij R., Derkach D., Maevskiy A., Karpov M., Ratnikov F., Ryzhikov A., Boldyrev A., Gushchin M., Ustyuzhanin A. et al. (The LHCb collaboration)
Journal of High Energy Physics 2022:36
*and 20 other publications prepared within the framework of CERN collaborations

Graphs with no induced house nor induced hole have the de Bruijn–Erdös property
Aboulker P., Beaudou L. et al.
Journal of Graph Theory 47, 777–780

Cross-domain limitations of neural models on biomedical relation classification
Alimova I., Tutubalina E., Nikolenko S.
IEEE Access 10, 1432–1439

Root subgroups on affine spherical varieties
Arzhantsev I., Avdeev R. 
Selecta Mathematica 28:60

Some finiteness results on triangular automorphisms
Arzhantsev I., Shakhmatov K. 
Results in Mathematics 77:75

Empirical variance minimization with applications in variance reduction and optimal control
Belomestny D., Iosipoi L., Paris Q., Zhivotovskiy N. 
Bernoulli 28, 1382 1407

Variance reduction for additive functionals of Markov chains via martingale representations
Belomestny D., Moulines E., Samsonov S. 
Statistics and Computing 32:16

Resonance scattering in a waveguide with identical thick perforated barriers
Delitsyn A., Grebenkov D.
Applied Mathematics and Computation 412:126592

Oracle Complexity Separation in Convex Optimization
Dmitriev A., Kornilov V. et al.
Frontiers in Physics 10:839383

A differentiable language model adversarial attack on text classifiers
Fursov I., Dmitrieva E., Artemova E. et al.
IEEE Access 10, 17966–17976

A tetrachotomy of ontology-mediated queries with a covering axiom
Gerasimova O., Podolskii V. et al.
Artificial Intelligence 309:103738

Deep Learning for direct Dark Matter search with nuclear emulsions
Golovatiuk A., Ustyuzhanin A. et al.
Computer Physics Communications 275:108312

Pairs of maps preserving singularity on subsets of matrix algebras
Guterman A., Maksaev A., Promyslov V. 
Linear Algebra and Its Applications 644, 1 27

Nucleus segmentation: Towards automated solutions
Hollandi R., Moshkov N. et al.
Trends in Cell Biology 2, 295 310

Early warning signals for critical transitions in sandpile cellular automata
 Ivanova A., Gasnikov A., Tyurin A. et al.
Journal of Optimization Theory and Applications 193, 462–490

Sampling discretization and related problems
Kashin B., Kosov E. et al.
Journal of Complexity 71:101653

Fast parametric curve matching (FPCM) for automatic spike detection
 Kleeva D., Ossadtchi A. et al.
Journal of Neural Engineering 19:036003 

Blaschke–Santaló inequality for many functions and geodesic barycenters of measures
Kolesnikov A., Werner E.
Advances in Mathematics 396:108110

On free semigroups of affine maps on the real line
Kolpakov A., Talambutsa A.
Proceedings of the American Mathematical Society 150, 2301 2307

Regularity of linear and polynomial images of Skorohod differentiable measures
Kosov E.
Advances in Mathematics 397:108193

Self-supervised recurrent depth estimation with attention mechanisms
Makarov I., Gerasimova O. et al.
PeerJ Computer Science 8:e865

Temporal network embedding framework with causal anonymous walks representations
Makarov I., Savchenko A., Kiselev D., Mikheev A.
PeerJ Computer Science 8:e858

Introducing the closure structure and the GDPM algorithm for mining and understanding a tabular dataset
Makhalova T., Buzmakov A., Kuznetsov S., Napoli A.
International Journal of Approximate Reasoning 145, 75 90

Low-rank tensor approximation of singularly perturbed boundary value problems in one dimension
Marcati C., Rakhuba M., Schwab C..
Advances in Computational Mathematics  48:18

Tensor rank bounds for point singularities in R3
Marcati C., Rakhuba M., Ulander J.
Calcolo  59:2

Discovering architecture-aware and sound process models of multi-agent systems: a compositional approach
Nesterov R., Lomazova I. et al.
Software and Systems Modeling. In press

Automatic differentiation for riemannian optimization on low-rank matrix and tensor-train manifolds
Novikov A., Rakhuba M., Oseledets I.
SIAM Journal of Scientific Computing. In press

Structure-adaptive manifold estimation
Puchkin N., Spokoiny V.
Journal of Machine Learning Research 23:40

Exponential Savings in Agnostic Active Learning through Abstention
Puchkin N., Zhivotovskiy N.
IEEE Transactions on Information Theory. In press

Lie brackets of nonsmooth vector fields and commutation of their flows
Rigoni C., Stepanov E., Trevisan D.
Journal of the London Mathematical Society. In press

Electron microscopy analysis of ATP-independent nucleosome unfolding by FACT
Sivkina A., Shaytan A. et al.
Communications Biology 5:2

Stochastic saddle-point optimization for the Wasserstein barycenter problem
Tiapkin D., Gasnikov A., Dvurechensky P.
Optimization Letters. In press

Homing sequence derivation with quantified Boolean satisfiability
Tu K.-H., Yevtushenko N. et al.
IEEE Transactions on Computers 71, 696–711

ADAR1 masks the cancer immunotherapeutic promise of ZBP1-driven necroptosis
Zhang T., Beknazarov N., Poptsova M. et al.
Nature 606, 594–602

2021 

Improving continuous-time conflict based search
Andreychuk A., Yakovlev K . et al.
National Conference of the American Association for Artificial Intelligence  (AAAI 2021), 11220-11227

NB-MLM: Efficient domain adaptation of masked language models for sentiment analysis
Arefyev N., Kharchev D., Shelmanov A.
Conference on Empirical Methods in Natural Language Processing (EMNLP 2021), 9114–9124

Distributed saddle-point problems under data similarity
Beznosikov A., Scutari G., Rogozin A., Gasnikov A.

Neural Information Processing Systems (NeurIPS 2021)

Navigating the GAN parameter space for semantic image editing
Cherepkov A., Voynov A., Babenko A.
IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2021), 3671–3680

Wilf classes of non-symmetric operads
Cherkasov A., Piontkovski D.
International Symposium on Symbolic and Algebraic Computation (ISSAC 2021), 91-98

On the embeddings of variables in recurrent neural networks for source code
Chirkova N.
Conference of the North American Chapter of the Association for Computational Linguistics (NAACL 2021), 2679-2689

A simple approach for handling out-of-Vocabulary identifiers in deep learning for source code
Chirkova N., Troshin S.
Conference of the North American Chapter of the Association for Computational Linguistics (NAACL 2021), 278-288

Empirical study of transformers for source code
Chirkova N., Troshin S.
European Software Engineering Conference and the ACM SIGSOFT Symposium on the Foundations of Software Engineering (ESEC/FSE 2021), 4988–4997

Newton method over networks is fast up to the statistical precision
Daneshmand A., Dvurechensky P., Gasnikov A. et al.
International Conference on Machine Learning (ICML 2021), 2398-2409

Federated-EM with heterogeneity mitigation and variance reduction
Dieuleveut A., Moulines E. et al.

Neural Information Processing Systems (NeurIPS 2021)

Distributed deep learning In open collaborations
Diskin M., Bukhtiyarov A., Ryabinin M., Borzunov A. et al.

Neural Information Processing Systems (NeurIPS 2021)

Tight high probability bounds for linear stochastic approximation with fixed stepsize
Durmus A., Moulines E., Naumov A., Samsonov S. et al.

Neural Information Processing Systems (NeurIPS 2021)

Improved complexity bounds in Wasserstein barycenter problem
Dvinskikh D., Tiapkin D.
International Conference on Artificial Intelligence and Statistics (AISTATS 2021), 1738-1746

Revisiting deep learning models for tabular data
Gorishniy Y., Rubachev I., Khrulkov V., Babenko A.

Neural Information Processing Systems (NeurIPS 2021)

Good classification measures and how to find them
Gösgens M., Prokhorenkova L.

Neural Information Processing Systems (NeurIPS 2021)

On a combination of alternating minimization and Nesterov’s momentum
Guminov S., Dvurechensky P., Tupitsa N., Gasnikov A.
International Conference on Machine Learning (ICML 2021), 3886-3898

Neural side-by-side: Predicting human preferences for no-reference super-resolution evaluation
Khrulkov V., Babenko A.
IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2021), 4988–4997

Deciding boundedness of monadic sirups
Kikot S., Kurucz A., Podolskii V., Zakharyaschev M.  
International Conference on Management of Data (SIGMOD/PODS 2021), 370–387

Lower bounds and optimal algorithms for smooth and strongly convex decentralized optimization over time-varying networks
Kovalev D., Gasnikov A. et al.

Neural Information Processing Systems (NeurIPS 2021)

ADOM: accelerated decentralized optimization method for time-varying networks
Kovalev D., Rogozin A., Gasnikov A.
et al.
International Conference on Machine Learning (ICML 2021), 5784-5793

Artificial text detection via examining the topology of attention maps
Kushnareva L., Artemova E., Piontkovski D. et al.
Conference on Empirical Methods in Natural Language Processing (EMNLP 2021), 635-649

On the periodic behavior of neural network training with batch normalization and weight decay
Lobacheva E., Kodryan M., Chirkova N., Malinin A, Vetrov D.

Neural Information Processing Systems (NeurIPS 2021)

A systematic evaluation of transfer learning and pseudo-labeling with BERT-based ranking models
Mokrii Iu., Boytsov L., Braslavski P.
International ACM Conference on Research and Development in Information Retrieval (SIGIR 2021), 2081-2085

Uncertainty measures in neural belief tracking and the effects on dialogue policy performance
van Niekerk C., Malinin A. et al.
Conference on Empirical Methods in Natural Language Processing (EMNLP 2021), 7901–7914

Revisiting mahalanobis distance for transformer-based out-of-domain detection
Podolskiy A., Lipin D., Artemova E., et al.
AAAI Conference on Artificial Intelligence (AAAI 2021), 13675–13682

Multi-sentence resampling: A simple approach to alleviate dataset length bias and beam-search degradation
Provilkov I., Malinin A.
Conference on Empirical Methods in Natural Language Processing (EMNLP 2021), 8612–8621

Convergence of array DBMS and cellular automata: A road traffic simulation case
Rodriges Zalipynis R.A.  
International Conference on Management of Data (SIGMOD/PODS 2021), 2399–2403

Moshpit SGD: Communication-efficient decentralized training on heterogeneous unreliable devices
Ryabinin M., Gorbunov E., Plokhotnyuk V., Pekhimenko G.

Neural Information Processing Systems (NeurIPS 2021)

Scaling ensemble distribution distillation to many classes with proxy targets
Ryabinin M., Malinin A., Gales M.

Neural Information Processing Systems (NeurIPS 2021)

Active learning for sequence tagging with deep pre-trained models and Bayesian uncertainty estimates
Shelmanov A., Artemova E.
et al.
European Association of Computational Linguistics (EACL 2021), 1698-1712

Overlapping spaces for compact graph representations
Shevkunov K., Prokhorenkova L.

Neural Information Processing Systems (NeurIPS 2021)

SPARQLing database queries from intermediate question decompositions
Saparina I., Osokin A.
Conference on Empirical Methods in Natural Language Processing (EMNLP 2021), 8984–8998

Leveraging recursive Gumbel-Max trick for approximate inference in combinatorial spaces
Struminsky K., Gadetsky A., Rakitin D., Karpushkin D.,Vetrov D.

Neural Information Processing Systems (NeurIPS 2021)

It's all in the heads: Using attention heads as a baseline for cross-lingual transfer in commonsense reasoning
Tikhonov A., Ryabinin M.
Association for Computational Linguistics (ACL-IJCNLP 2021), 3534–3546

Towards time-optimal any-angle path planning with dynamic obstacles
Yakovlev K., Andreychuk A.

International Conference on Automated Planning and Scheduling (ICAPS 2021), 405-414


Observation of the mass Difference between Neutral Charm-Meson Eigenstates
Aaij R., Derkach D., Maevskiy A., Karpov M., Ratnikov F., Ryzhikov A., Boldyrev A., Gushchin M., Ustyuzhanin A. et al. (The LHCb collaboration)
Physical Review Letters 127:111801
*and 80 other publications prepared within the framework of CERN collaborations

About semblance filtering in (tau-p)-domain
Akhmetsafin R., Akhmetsafina R., Smelov A.
IEEE Geoscience and Remote Sensing Letters

Histone dynamics mediate DNA unwrapping and sliding in nucleosomes
Armeev G., Shaytan A. et al.
Nature Communications 12:2387

Limit points and additive group actions
Arzhantsev I.
Ricerche di Matematica

First-order rewritability of ontology-mediated queries in linear temporal logic
Artale A., Zakharyaschev M. et al.
Artificial Intelligence 299:103536

Derivations of group rings for finite and FC groups
Arutyunov A., Kosolapov L.
Finite Fields and their Applications 76:101921

Manifolds of isospectral arrow matrices
Ayzenberg A., Buchstaber V.
Sbornik Mathematics 212:605

Manifolds of isospectral matrices and Hessenberg varieties
Ayzenberg A., Buchstaber V.
International Mathematics Research Notices 2021, 16671–16692

Moments of L-functions and the Liouville-Green method
Balkanova O., Frolenkov D.
Journal of the European Mathematical Society 23, 1333–1380

Density deconvolution under general assumptions on the distribution of measurement errors
Belomestny D., Goldenshluger A.
Annals of Statistics 49, 615–649

Variance reduction for dependent sequences with applications to Stochastic Gradient MCMC
Belomestny D., Iosipoi L., Moulines E., Naumov A., Samsonov S.
SIAM-ASA Journal on Uncertainty Quantification 9, 507–535

Massive MIMO adaptive modulation and coding using online deep learning algorithm
Bobrov E., Kropotov D., Lu H.
IEEE Communications Letters. In press

On distributions of homogeneous and convex functions in Gaussian random variables
Bogachev V., Kosov E., Popova S.
Izvestiya Mathematics 85, 852–882

Regularity of solutions to Kolmogorov equations with perturbed drifts
Bogachev V., Kosov E., Shaposhnikov A.
Potential Analysis

Entropic-Wasserstein barycenters: PDE characterization, regularity, and CLT
Carlier G., Kroshnin A.
Siam Journal on Mathematical Analysis 53, 5880–5914

Comprehensive analysis of cancer breakpoints reveals signatures of genetic and epigenetic contribution to cancer genome rearrangements
Cheloshkina K., Poptsova M.
PLOS Computational Biology 17

Switching systems with dwell time: Computing the maximal Lyapunov exponent
Chitour Y., Protasov V. et al.
Nonlinear Analysis: Hybrid Systems 40:101021

Molecular mechanisms of oncogenesis through the lens of nucleosomes and histones
Espiritu D., Shaytan A. et al.
Journal of Physical Chemistry B 125, 3963-3976

Fast incremental expectation maximization for finite-sum optimization: nonasymptotic convergence
Fort G., Gach P., Moulines E.
Statistics and Computing 31:48

MEG signatures of long-term effects of agreement and disagreement with the majority
Gorin A., Ossadtchi A. et al.
Scientific Reports 11:3297

SpheroidPicker for automated 3D cell culture manipulation using deep learning
Grexa I., Moshkov N. et al.
Scientific Reports 11:14813

Linear functions preserving Green's relations over fields
Guterman A., Maksaev A. et al.
Linear Algebra and its Applications 611, 310-333

Shifting paths to avoidable ones
Gurvich V., Krnc M., Milanic M., Vyalyi M.
Journal of Graph Theory (2021)

Generalization of change-point detection in time series data based on direct density ratio estimation
Hushchyn M., Ustyuzhanin A.
Journal of Computational Science 53:101385

Automated identification of current sheets—A new tool to study turbulence and intermittency in the solar wind
Khabarova O., Sagitov T. et al.
Journal of Geophysical Research: Space Physics 126:e2020JA029099

Robust k-means clustering for distributions with two moments
Klochkov Y., Kroshnin A., Zhivotovskiy N.
Annals of Statistics 49, 2206–2230

Evolution of MEG: A first MEG-feasible fluxgate magnetometer
Koshev N., Ossadtchi A. et al.
Human Brain Mapping 42, 4844-4856

Marcinkiewicz-type discretization of Lp-norms under the Nikolskii-type inequality assumption
Kosov E.
Journal of Mathematical Analysis and Applications 504:125358

Total variation distance estimates via L2-norm for polynomials in log-concave random vectors
Kosov E.
International Mathematics Research Notices 2021, 16492–16508

Automatic Kolmogorov complexity, normality, and finite-state dimension revisited
Kozachinskiy A., Shen A.
Journal of Computer and System Sciences 118, 75-107

On the Gardner-Zvavitch conjecture: Symmetry in inequalities of Brunn-Minkowski type
Kolesnikov A., Livshyts G.
Advances in Mathematics 384:107689

Deep convolutional neural networks help scoring tandem mass spectrometry data in database-searching approaches
Kudriavtseva P., Kashkinov M., Kertesz-Farkas A.
Journal of Proteome Research 20, 4708-4717

Modified covariance beamformer for solving MEG inverse problem in the environment with correlated sources
Kuznetsova A., Nurislamova Y., Ossadtchi A.
NeuroImage 228:117677

A game-theoretical model of the landscape theory
Le Breton M., Shapoval A., Weber S.
Journal of Mathematical Economics 92, 41-46

MMS observations of super thin electron-scale current sheets in the Earth's magnetotail
Leonenko M., Popov V. et al.
Journal of Geophysical Research: Space Physics 126:e2021JA029641

Algorithms yield upper bounds in differential algebra
Li W., Pogudin G. et al.
Canadian Journal of Mathematics 1-23

Fault detection in Tennessee Eastman process with temporal deep learning models
Lomov I., Lyubimov M., Makarov I., Zhukov L.
Journal of Industrial Information Integration 23:100216

Survey on graph embeddings and their applications to machine learning problems on graphs
Makarov I., Kiselev D., Nikitinsky N. et al.
PeerJ Computer Science 7:e357

Fusion of text and graph information for machine learning problems on networks
Makarov I. Makarov M., Kiselev D.
PeerJ Computer Science 7:e526

Mint: MDL-based approach for mining INTeresting numerical pattern sets
Makhalova T., Kuznetsov S., Napoli A.
Data Mining and Knowledge Discovery 

Simulating the time projection chamber responses at the MPD detector using generative adversarial networks
Maevskiy A., Ratnikov F., Zinchenko A. et al.
European Physical Journal C 81:599

A Petri net extension for systems of concurrent communicating agents with durable actions
Mecheraoui K., Lomazova I., Belala N.
Journal of Parallel and Distributed Computing 155, 14–23

Local ancestry prediction with PyLAE
Moshkov N., Smetanin A., Tatarinova T.
PeerJ 9:e12502

Decoding and interpreting cortical signals with a compact convolutional neural network
Petrosyan A., Sinkin M., Ossadtchi A. et al.
Journal of Neural Engineering 18

Robust alternating direction implicit solverin quantized tensor formats for athree-dimensional elliptic PDE
Rakhuba M.
SIAM Journal of Scientific Computing 43, A800-A827

Array DBMS: past, present, and (near) future
Rodriges Zalipynis R.
Proceedings of the VLDB Endowment 14, 3186-3189

The p53 family member p73 in the regulation of cell stress response
Rozenberg J., Bessmertnyi A. et al.
Biology Direct 16:23

NFAD: fixing anomaly detection using normalizing flows
Ryzhikov A., Borisyak M., Ustyuzhanin A., Derkach D.
PeerJ Computer Science 7:e757

Neuropsychiatric disease classification using functional connectomics- results of the connectomics in neuroimaging transfer learning challenge
Schirmer M., Levchenko E. et al.
Medical Image Analysis 70

1/x power-law in a close proximity of the Bak–Tang–Wiesenfeld sandpile
Shapoval A., Shapoval B., Shnirman M.
Scientific Reports 11:18151

Least-squares community extraction in feature-rich networks using similarity data
Shalileh S., Mirkin B.
PLoS ONE 16:e0254377

Zeroth-order methods for noisy Hölder-gradient functions
Shibaev I., Dvurechensky P., Gasnikov A.
Optimization Letters

Inexact model: a framework for optimization and variational inequalities
Stonyakin F., Tyurin A., Gasnikov A., Dvurechensky P., Alkousa M. et al.
Optimization Methods and Software

Extreme events in a forced BVP oscillator: Experimental and numerical studies
Thangavel B., Srinivasan S., Kathamuthu T.
Chaos, Solitons and Fractals 153:111569

An ontology-based approach to the analysis of the acid-base state of patients at operative measures
Tianxing M., Ignatov D. et al.
PeerJ Computer Science 7:e777

Alternating minimization methods for strongly convex optimization
Tupitsa N., Dvurechensky P., Gasnikov A., Guminov S.
Journal of Inverse and Ill-Posed Problems 29, 721-739

Cortical and autonomic responses during staged Taoist meditation: Two distinct meditation strategies
Volodina M., Smetanin N., Lebedev M., Ossadtchi A.
PLOS ONE  16:e0260626

Strong subalgebras and the constraint satisfaction problem
Zhuk D.
Journal of Multiple-Valued Logic and Soft Computing 36, 455-504

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Fast Depth Map Super-Resolution Using Deep Neural Network